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100,000 Genomes Project in Wales - Bioinformatics Training
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Introduction to Genomic Technologies
Ethics issues with genomic sequencing
Genomics in research
Next Generation Sequencing
NGS Technologies
Panel, Exome and Whole Genome Sequencing
SNP and indel theory
Introduction to Clinical Genomics
Clinical annotation of variants
Clinical applications of genomics
The 100,000 genomes project in Wales
Introduction to Genomic Data
Data management for genomics
Experimental designs for variant calling
NGS data formats and tools
Overview of human reference genomes
Public sequencing repositories
Bioinformatics Practicals
Advanced variant calling
Basic variant calling
Creating pipelines for variant discovery
High throughput annotation of variants
Manual annotation of variants
Mapping reads to a reference genome
Quality control of NGS reads
Variant filtering
Visualising NGS data and analysis results
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Computing Skills Practicals
Bash scripting
Connecting to Supercomputing Wales
Filtering data with Excel
Introduction to the UNIX command line
Jobs and queuing on HPC systems
Redirection and piping
Working with containers
Working with text files
Additional Topic Primers
ChIP-seq analysis
RNAseq analysis
The R environment for statistical computing
Variant calling in transcriptomes
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