Documentation

• Genview2

  • Quick start guide
  • Explore
  • Heatmaps
  • Gene Ontology
  • Datasets
  • Lists
  • Annotation
  • Sharing your data
  • References and links
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• Beginning UNIX on Raven

  • Getting started
  • Files and navigation
  • Working with text files
  • Final knowledge check
  • Answers
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• Introduction to NGS analysis

  • Overview
  • Running an interactive job on Raven
  • Setup simulated reads
  • Quality Control
  • Mapping reads
  • Variant discovery
  • Comparisons between workflows
  • Summary of file formats
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• Using Raven for Bioinformatics

  • Key concepts
  • Getting setup with ARCCA
  • Quick start
  • Helpful scripts
  • Raven architecture
  • Software modules
  • Job queues
  • Customising your environment
  • Examples
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